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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THYM cis rs10935120 1 rs7371896 chr3:134249769 CEP63 chr3:134204575-134293852:+ 0.4 5.76 1.02E-7 Height
THYM cis rs9815354 1 rs7372217 chr3:41990122 ULK4 chr3:41288091-42003660:- -1.01 -11.41 1.64E-19 Diastolic blood pressure
THYM cis rs73726531 1 rs73726531 chr6:18103028 NHLRC1 chr6:18120718-18122851:- -1.06 -4.38 3.09E-5 Thiopurine S-methyltransferase activity
THYM cis rs10935120 1 rs7374158 chr3:134270156 ANAPC13 chr3:134196547-134204865:- 0.58 8.01 2.88E-12 Height
THYM cis rs10935120 1 rs7374158 chr3:134270156 CEP63 chr3:134204575-134293852:+ 0.41 6.04 2.93E-8 Height
THYM cis rs10935120 1 rs7374325 chr3:134275601 ANAPC13 chr3:134196547-134204865:- 0.58 8.05 2.33E-12 Height
THYM cis rs10935120 1 rs7374325 chr3:134275601 CEP63 chr3:134204575-134293852:+ 0.4 5.81 8.19E-8 Height
THYM cis rs6430585 1 rs73958618 chr2:136500475 DARS chr2:136664254-136743222:- 0.36 4.14 7.64E-5 Corneal structure
THYM cis rs9894429 1 rs7406003 chr17:79597597 TSPAN10 chr17:79609349-79615778:+ 0.63 6.54 3.14E-9 Eye color traits
THYM cis rs7412746 1 rs7412746 chr1:150860471 HORMAD1 chr1:150670542-150693352:- -0.63 -5.01 2.48E-6 Melanoma
THYM cis rs7072122 1 rs74138428 chr10:45030702 ZNF22 chr10:45496273-45500776:+ 0.47 4.67 9.87E-6 Estradiol plasma levels (breast cancer)
THYM cis rs7589728 1 rs7425670 chr2:88522028 THNSL2 chr2:88469835-88486145:+ -0.5 -4.23 5.34E-5 Plasma clusterin levels
THYM cis rs10935120 1 rs7426847 chr3:134267519 ANAPC13 chr3:134196547-134204865:- -0.59 -8.13 1.58E-12 Height
THYM cis rs10935120 1 rs7426847 chr3:134267519 CEP63 chr3:134204575-134293852:+ -0.41 -5.87 6.33E-8 Height
THYM cis rs10935120 1 rs7427492 chr3:134261654 ANAPC13 chr3:134196547-134204865:- 0.58 8.05 2.33E-12 Height